pubmed: "bmc bioinformatics"...

NCBI: db=pubmed; Term="BMC Bioinformatics"[jour]

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scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data.

Related Articles scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data. BMC Bioinformatics. 2020 Aug 04;21(1):342 Authors: Choi JH, In Kim H, Woo HG Abstract BACKGROUND: Recent advances in single-cell RNA sequencing (scRNA-seq) technology have enabled the identification...

smsMap: mapping single molecule sequencing reads by locating the alignment starting positions.

Related Articles smsMap: mapping single molecule sequencing reads by locating the alignment starting positions. BMC Bioinformatics. 2020 Aug 04;21(1):341 Authors: Wei ZG, Zhang SW, Liu F Abstract BACKGROUND: Single Molecule Sequencing (SMS) technology can produce longer reads with higher sequencing...

RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data.

RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data. BMC Bioinformatics. 2020 Aug 01;21(1):340 Authors: Li F, Xing X, Xiao Z, Xu G, Yang X Abstract BACKGROUND: Ribosome profiling has been widely used for studies of translation under a large variety...

MutEnricher: a flexible toolset for somatic mutation enrichment analysis of tumor whole genomes.

Related Articles MutEnricher: a flexible toolset for somatic mutation enrichment analysis of tumor whole genomes. BMC Bioinformatics. 2020 Jul 31;21(1):338 Authors: Soltis AR, Dalgard CL, Pollard HB, Wilkerson MD Abstract BACKGROUND: Analysis of somatic mutations from tumor whole exomes has fueled...

IDSSIM: an lncRNA functional similarity calculation model based on an improved disease semantic similarity method.

Related Articles IDSSIM: an lncRNA functional similarity calculation model based on an improved disease semantic similarity method. BMC Bioinformatics. 2020 Jul 31;21(1):339 Authors: Fan W, Shang J, Li F, Sun Y, Yuan S, Liu JX Abstract BACKGROUND: It has been widely accepted that long non-coding...

ADMIXPIPE: population analyses in ADMIXTURE for non-model organisms.

Related Articles ADMIXPIPE: population analyses in ADMIXTURE for non-model organisms. BMC Bioinformatics. 2020 Jul 29;21(1):337 Authors: Mussmann SM, Douglas MR, Chafin TK, Douglas ME Abstract BACKGROUND: Research on the molecular ecology of non-model organisms, while previously constrained, has...

Statistical shape analysis of tap roots: a methodological case study on laser scanned sugar beets.

Related Articles Statistical shape analysis of tap roots: a methodological case study on laser scanned sugar beets. BMC Bioinformatics. 2020 Jul 29;21(1):335 Authors: Heeren B, Paulus S, Goldbach H, Kuhlmann H, Mahlein AK, Rumpf M, Wirth B Abstract BACKGROUND: The efficient and robust statistical...

A topological data analysis based classification method for multiple measurements.

Related Articles A topological data analysis based classification method for multiple measurements. BMC Bioinformatics. 2020 Jul 29;21(1):336 Authors: Riihimäki H, Chachólski W, Theorell J, Hillert J, Ramanujam R Abstract BACKGROUND: Machine learning models for repeated measurements are limited....

Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets.

Related Articles Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets. BMC Bioinformatics. 2020 Jul 28;21(1):334 Authors: Yue Y, Huang H, Qi Z, Dou HM, Liu XY, Han TF, Chen Y, Song XJ, Zhang YH, Tu J Abstract BACKGROUND: Shotgun metagenomics based on...

Construction and optimization of gene expression signatures for prediction of survival in two-arm clinical trials.

Related Articles Construction and optimization of gene expression signatures for prediction of survival in two-arm clinical trials. BMC Bioinformatics. 2020 Jul 25;21(1):333 Authors: Theilhaber J, Chiron M, Dreymann J, Bergstrom D, Pollard J Abstract BACKGROUND: Gene expression signatures for the...

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