Dear all, I need bed files for **admixture** and **map** files for **beagle imputation** for **polyploid** plant. I tried through **Plink** but it do not support polyploid organisms. If I use **--allow-extra-chr** flag to run it anyway, I observed **0s** in third row of output **.bim** and **.map** file. Your help will be highly appreciated.

Talk to your HPC sysadmin - array jobs might be getting different kinds of nodes compared to standalone jobs.

Thank you for your answer!

Hi, I wonder how the samtools consensus work without explicitly pointing out the reference genome. If I intend to add a reference genome to generate the consensus sequence, is it possible based on samtools? Thanks a lot. Reference: https://www.htslib.org/doc/samtools-consensus.html

I want to understand what meffil.snp.concordance does ![enter image description here][1] As it mentioned above (image), if I run meffil.snp.concordance, it will return two vectors. providing concordances between genotypes and SNP betas for matched samples providing concordances between genotypes and SNP betas for matched SNPs I have...

The following error occurred in PseudobulkExpression.Seurat(object = object, assays = assays,: None of the requested assays are present in the object. The above error occurs. Below is the code I ran: cts